DGE between abecma Ide-cel and Cilta-cel
Results
All cells
single cell
sample level
## Warning: Removed 5759 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1451 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
major cell type level
## Warning: Removed 5751 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1460 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6399 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 141 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5751 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1460 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6399 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 141 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
cell subtype level
## Warning: Removed 5690 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1226 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6399 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 141 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6214 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1002 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5864 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 992 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5925 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 3321 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5919 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 970 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5942 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 928 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6301 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 719 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5476 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1014 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 9278 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 16 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6712 rows containing missing values (`geom_text_repel()`).
Pseudobulk
sample level
## Warning: Removed 33 rows containing missing values (`geom_point()`).## Warning: Removed 11313 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 869 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
major cell type level
## Warning: Removed 29 rows containing missing values (`geom_point()`).## Warning: Removed 11352 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 830 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 10703 rows containing missing values (`geom_point()`).## Warning: Removed 11989 rows containing missing values (`geom_text_repel()`).
cell subtype level
## Warning: Removed 487 rows containing missing values (`geom_point()`).## Warning: Removed 11754 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 400 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 14 rows containing missing values (`geom_point()`).## Warning: Removed 11983 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 37 rows containing missing values (`geom_point()`).## Warning: Removed 11422 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 760 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 2607 rows containing missing values (`geom_point()`).## Warning: Removed 11922 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 244 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 98 rows containing missing values (`geom_point()`).## Warning: Removed 11545 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 630 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 2362 rows containing missing values (`geom_point()`).## Warning: Removed 11918 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 206 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 1894 rows containing missing values (`geom_point()`).## Warning: Removed 12070 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 95 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 487 rows containing missing values (`geom_point()`).## Warning: Removed 11863 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 299 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 9790 rows containing missing values (`geom_point()`).## Warning: Removed 10802 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 16 rows containing missing values (`geom_point()`).## Warning: Removed 11420 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 755 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 10703 rows containing missing values (`geom_point()`).## Warning: Removed 11989 rows containing missing values (`geom_text_repel()`).
CAR+ cells
single cell
sample level
## Warning: Removed 5764 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1670 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
major cell type level
## Warning: Removed 5767 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1668 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6936 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
cell subtype level
## Warning: Removed 5814 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1352 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5899 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1095 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6589 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 453 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6292 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1047 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6018 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1117 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6581 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 722 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 10127 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 6066 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 567 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6936 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7573 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1788 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7487 rows containing missing values (`geom_text_repel()`).
Pseudobulk
sample level
## Warning: Removed 24 rows containing missing values (`geom_point()`).## Warning: Removed 11073 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 622 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
major cell type level
## Warning: Removed 25 rows containing missing values (`geom_point()`).## Warning: Removed 11085 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 611 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 12 rows containing missing values (`geom_point()`).## Warning: Removed 10804 rows containing missing values (`geom_text_repel()`).
cell subtype level
## Warning: Removed 1143 rows containing missing values (`geom_point()`).## Warning: Removed 11379 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 284 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 10 rows containing missing values (`geom_point()`).## Warning: Removed 11544 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 252 rows containing missing values (`geom_point()`).## Warning: Removed 11182 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 508 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 1596 rows containing missing values (`geom_point()`).## Warning: Removed 11455 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 218 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 562 rows containing missing values (`geom_point()`).## Warning: Removed 11315 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 373 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7012 rows containing missing values (`geom_point()`).## Warning: Removed 11622 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 25 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 11 rows containing missing values (`geom_point()`).## Warning: Removed 11688 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 21 rows containing missing values (`geom_point()`).## Warning: Removed 11580 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 102 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 3 rows containing missing values (`geom_point()`).## Warning: Removed 10068 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 240 rows containing missing values (`geom_point()`).## Warning: Removed 11139 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 544 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 12 rows containing missing values (`geom_point()`).## Warning: Removed 10804 rows containing missing values (`geom_text_repel()`).